miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|114435777|gb|EE749693.1|EE749693 CGAGGACACCCCGGGAGCAAGGCGCCACGCGTCTGGGCGCCTCTCCTTCCGGTGAGGGGCTCTGGGTCTGTGGGGCGGGG
CCTCATGGAGGCCAGTGGCCCCGGGACCTGCGGAGGAGGGGCTGAGACCCGGGGCTCGGAGGGGCGGCTGGCACCTGAGT
CGAGGGTACACTTCCGAGTGACAAGGTTCATCATGGAGGCAGGTATCAAGCTAGGGATGCGGTCCATCCCCATCGCCACC
GCCTGTACCATTTACCATAAATTCTTCTGCGAGATCAACCTGGACGCCTACGACCCCTACTTGGTGGCCATGTCTTCCCT
TTACTTGGCCGGCAAAGTGGAGGAACAGCATCTGCGCACACGTGACATCATCAATGTTTCCAACAGGTACTTCCACCCGG
GCAGTGACCCCTTGGAGCTAGACTCGCGCTTCTGGGAGATCCGGGACAGCATCGTACAGTGCGAACTGCTCGTGCTGCGG
GTCCTGCGTTTTCAGGTCTCCTTCCAGCACCCGCACAAGTACCTGCTCCACTACCTGGTCTCGCTCAAGAACTGGCTGAA
CCGTTACAGCTGGCAGCGGACCCCTGTCTCCGTTACTGCCTGGGCTTTGCTACAGGACAGCTACCACGGGGGGCTTTGCC
TCCGCTTCCGGGCTCAGCACATAGCCCTGGCAGTAATCCACCTGGCCCTACAGCCTATTGGGTTGAAGTGCCTGCTGAGG
CCGAGGCGAGAAGCATGGTGGCAGGTGTTTAGTGAAGACCTTACCAGCCAACCATTGATAACATTGTGTCTGATCTCATT
CAGATTATACCATGG




Most similar to sp|Q8QZR8|FA58A_MOUSE

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q8QZR8|FA58A_MOUSE Cyclin-related protein FAM58A OS=Mus musculus
           GN=Fam58a PE=2 SV=2
          Length = 250

 Score =  379 bits (974), Expect = e-104
 Identities = 184/233 (78%), Positives = 208/233 (89%), Gaps = 1/233 (0%)
 Frame = +1

Query: 85  MEASGPGTCGGGAETRGSEGRLAPESRVHFRVTRFIMEAGIKLGMRSIPIATACTIYHKF 264
           MEA  P +C  G     +E R APE+RVHFRVTRFIMEAG+KLGM+SIPIATACTIYHKF
Sbjct: 1   MEAVRPDSCESGPAAPRAEERPAPEARVHFRVTRFIMEAGVKLGMQSIPIATACTIYHKF 60

Query: 265 FCEINLDAYDPYLVAMSSLYLAGKVEEQHLRTRDIINVSNRYFHPGSDPLELDSRFWEIR 444
           FCEINLDAYD YLVAMSS+YLAGKVEEQHLRTRDIINVS+RYF+PGS+PLELDSRFWE+R
Sbjct: 61  FCEINLDAYDLYLVAMSSIYLAGKVEEQHLRTRDIINVSHRYFNPGSEPLELDSRFWELR 120

Query: 445 DSIVQCELLVLRVLRFQVSFQHPHKYLLHYLVSLKNWLNRYSWQRTPVSVTAWALLQDSY 624
           DSIVQCELL+LRVLRFQVSFQHPHKYLLHYL+SLKNWLNRYSWQRTP+SVTAWALL+DSY
Sbjct: 121 DSIVQCELLMLRVLRFQVSFQHPHKYLLHYLISLKNWLNRYSWQRTPISVTAWALLRDSY 180

Query: 625 HGGLCLRFRAQHIALAVIHLALQPIGLKCLLRPRRE-AWWQVFSEDLTSQPLI 780
           HGGLCLRF+AQH+A+AV++LALQ  G++       E  WWQVFS+DLT +P+I
Sbjct: 181 HGGLCLRFQAQHLAVAVLYLALQVYGVEVPAEGEAEKPWWQVFSDDLT-KPII 232